Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs1418456 | chr1:96295015 | C/T | 3.43E-5 | 99 | 5.85 | 11.73 | 15.47 | KM Plot |
| SKCM | rs1418457 | chr1:96294754 | T/G | 3.43E-5 | 99 | 5.85 | 11.73 | 15.47 | KM Plot |
| SKCM | rs1418459 | chr1:96293388 | T/C | 3.43E-5 | 99 | 5.85 | 11.73 | 15.47 | KM Plot |
| SKCM | rs1422582 | chr5:148436925 | T/C | 1.84E-5 | 100 | 15.02 | 13.8 | 9 | KM Plot |
| SKCM | rs143430554 | chr2:232816467 | ACATAT/A | 2.56E-5 | 99 | 15.47 | 13.73 | 9 | KM Plot |
| SKCM | rs144144855 | chr4:119792959 | C/T | 0 | 96 | 14.8 | 13.42 | 6.33 | KM Plot |
| SKCM | rs144682603 | chr11:64047804 | A/AAAT | 4.0E-10 | 97 | 6.83 | 15.57 | 14.7 | KM Plot |
| SKCM | rs145911924 | chr16:3539105 | A/G | 6.1E-7 | 100 | 15.02 | 16.82 | 7.4 | KM Plot |
| SKCM | rs146286387 | chr5:558097 | C/T | 0 | 100 | 15.3 | 14.7 | 6.33 | KM Plot |
| SKCM | rs1463821 | chr12:63402875 | C/G | 1.82E-7 | 101 | 8.8 | 14.3 | 15.3 | KM Plot |
| SKCM | rs146656029 | chr12:63424676 | C/T | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs147803483 | chr2:65744952 | C/T | 5.12E-7 | 100 | 15.3 | 13.9 | 8.8 | KM Plot |
| SKCM | rs148590852 | chr5:66765240 | C/CAT | 3.06E-5 | 100 | 9 | 13.37 | 15.02 | KM Plot |
| SKCM | rs148682631 | chr4:12266695 | C/G | 2.02E-5 | 100 | 14.8 | 14.32 | 9 | KM Plot |
| SKCM | rs1489755 | chr5:66767536 | C/T | 3.06E-5 | 100 | 9 | 13.37 | 15.02 | KM Plot |